YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116117870, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	115	0.63
Transmembrane Helix	116	136	0.76
Cytoplasmic	137	290	0.78
Transmembrane Helix	291	308	0.87
Non-Cytoplasmic	309	314	0.60
Transmembrane Helix	315	333	0.89
Cytoplasmic	334	348	0.71
Transmembrane Helix	349	369	0.86
Non-Cytoplasmic	370	384	0.79
Transmembrane Helix	385	406	0.87
Cytoplasmic	407	423	0.69
Transmembrane Helix	424	446	0.76
Non-Cytoplasmic	447	466	0.92
Transmembrane Helix	467	487	0.91
Cytoplasmic	488	579	0.98
Transmembrane Helix	580	599	0.97
Non-Cytoplasmic	600	606	0.78
Transmembrane Helix	607	624	0.86
Cytoplasmic	625	637	0.74
Transmembrane Helix	638	660	0.82
Non-Cytoplasmic	661	679	0.81
Transmembrane Helix	680	703	0.85
Cytoplasmic	704	726	0.71
Transmembrane Helix	727	751	0.74
Non-Cytoplasmic	752	770	0.60
Transmembrane Helix	771	794	0.88
Cytoplasmic	795	797	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQVTEASLEI WRTLPAAIRQ DPSLASFRQE HERLHGPDED PLPNEDVSAD DGDDSHSKEF  60
   61 ITIKVTNPDS SVEDGKTTTV VAEQSEKNGQ NMTTDGEGDD GHETTMGGHH EHGKLFGYIK 120
  121 IGTLLVVWLI FTGFLMSKHE KELTPRQLSV PEGAYRTYIL PEPSLGPRIG INFKGAFLSD 180
  181 QHHNNTSTYL SVILQLLYLP SNNSNTSFLS EYDAKYTENI TNVWLVPIPS SLDAIDQMDE 240
  241 MTRKHVFDIG PINHQKVTSG KAVVRMRLTT NLEADFPTKF TYDPTPMDTE TGVIYAAIVL 300
  301 LGLYVLIIWE IVHRTFAAII ASTLAIGVLA AMNERPSMPK LISWIDVETL LLLFGMMILV 360
  361 AILSETGIFD YLAVYAYQVT NGKVWPLINC LCVFTAVMSS FLDNVTTVLL MTPVTIRLCE 420
  421 VMELNPVPVL MSMVIYSNVG GTLTPVGDPP NVIIASNSHI AKNGVNFATF TLHMAIPIFF 480
  481 VMITTYFQLR MKFKNINDLR FSEPQDVQEI RHEIAVWQRA AASLSSYSKD EDLVRETLLK 540
  541 KVNRLSRSLK KKLVTGSVPA ESYKATLEEM KRKYPIRSKT LLVKSAITLA FVITFFFLHS 600
  601 APDIQKLSLG WTALLGALLL LILADREDIE SVISRVEWST LLFFAALFIL MEALSELGLI 660
  661 DWIGKQTENV ILSVSEESRL AVAILIILWV SAFASAFVDN IPLTTMMVKI AIGLAENEAL 720
  721 DLPLQPLVWA LALGACLGGN GTLIGASANV VCAGVAEQHG YRFTFIEYFK VGFPVMVGSV 780
  781 IVSTIYLMFA HVVFTWH