YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|118786613, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGDQQQFFS SGTSYPQQQP GYGIGFAPQQ AGMQPGFHPS AFAPSAGSPD GYSPYDAESA  60
   61 TVKGFDFNDQ TIRRGFIKKV YSILTLQLSI TFVFVAFVMN HEPTQLFIRR NPSLFWIAFL 120
  121 VMIGTMIAIS CCGELRRKAP ANFIFLGLFT FAESFLVSMV AATYKSEEVL LAFGITAAVC 180
  181 LGLTLFAFQT KWDFTMMGGI LFTAVVVLFL FGLIAMFFPG KTMQIVYSSC GALLFSFYLV 240
  241 YDTQIMMGGS HKFSISPEEY VFAALCLYLD VINIFLHILS IIGASRN

Type	Start	End	Confidence
Cytoplasmic	1	79	0.99
Transmembrane Helix	80	99	0.93
Non-Cytoplasmic	100	113	0.84
Transmembrane Helix	114	133	0.96
Cytoplasmic	134	141	0.85
Transmembrane Helix	142	162	0.95
Non-Cytoplasmic	163	168	0.83
Transmembrane Helix	169	188	0.95
Cytoplasmic	189	196	0.78
Transmembrane Helix	197	218	0.92
Non-Cytoplasmic	219	224	0.75
Transmembrane Helix	225	241	0.93
Cytoplasmic	242	259	0.82
Transmembrane Helix	260	281	0.89
Non-Cytoplasmic	282	287	0.68