YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|255003713, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSFRIENGD CVSTFTLPCR ILSLRTRTDN MEASELSIGI IFISLTIIGI LGNVTLLYHY  60
   61 TYFYLTRYKL RSTDWILIHL IVANILTVLC KGVPQTISSF GFKDFLNDIG CKLVSSLHRV 120
  121 GRGTGIGSTS FLSVFQAIII SPRNSRDSEL KVRTHKCICC SVYLNWVIYL LISSVNLVHM 180
  181 RARYGNESTT NLKSFIYCYS VRHDPTSDIL YATLLSGPEV LLLGLMLWAS GSMVLTLYRH 240
  241 KQMMQYMSRT SLSSRSSPES RATKTILLLV CTFVSFYTIS SVCQSFGALL YNPKWSLVNI 300
  301 TAMSSLLFPT VCPFLLMSQD SRISSYLKRN IHFP

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.72
Transmembrane Helix	38	62	0.86
Cytoplasmic	63	74	0.69
Transmembrane Helix	75	95	0.84
Non-Cytoplasmic	96	122	0.73
Transmembrane Helix	123	140	0.80
Cytoplasmic	141	156	0.81
Transmembrane Helix	157	178	0.81
Non-Cytoplasmic	179	219	0.92
Transmembrane Helix	220	239	0.94
Cytoplasmic	240	264	0.90
Transmembrane Helix	265	288	0.85
Non-Cytoplasmic	289	296	0.83
Transmembrane Helix	297	317	0.94
Cytoplasmic	318	334	0.94