YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116184835, gi...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPLKKEQPK VAEPPKTAEP AKVEFEEKQG KRGVKLGTVA IILSIIFGGG LAYKLHQQQA  60
   61 DYQAQIAQLK SQLESTQASM KQELSRVQEE TIEKATTVTH KAEVVLGQQQ KSIESLQLAV 120
  121 ADVKGRRPND WLLAEADYLV KLAGRKLFLE HDVESATQLM ESADQRIAAL NDPSLVKLRK 180
  181 AMANDITKLR TIPLIDRDGL VLRLTALQQQ VDKLPLANAL LPEAEAVENT EVSEDIANWQ 240
  241 DNLMTSLKDF SENFITFRTR DGNVIPLLSP EQHFYLKENI KAKLETAIKA VYQEQGEIYT 300
  301 TSLKTADKWA LAFFNQDDNS VKEFNKTVNQ LSQQNIQVEY PTKLQSQSQL SDVIRERLRR 360
  361 EVTTMTGMED K

Type	Start	End	Confidence
Cytoplasmic	1	33	0.88
Transmembrane Helix	34	53	0.84
Non-Cytoplasmic	54	371	0.99