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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116217517
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVLAVAMFK VTRQVADLRL ESHQYSEQLF HFYRLSQELK QSSDHLTKFA RAYASTGNER  60
   61 WLRMFNQVLD VRSGKLPAPN NNDYEFWDVA VLNDASELTP NANQRYPTLI ERIRQSGIGS 120
  121 VEFLELQNAL SLSDQLVALE REAFMAVKGW KKEFAGEYRY TGEPDLNFAR SLLYSEKYFL 180
  181 EKAKIMAAIG SSHSNIVGRI ESQVRSADKK AQYYERVNSV LVSLLLLAIM ASFVLLWIVY 240
  241 VAPLSILLKT VVRQVRNEDY EFTLTQKAYG ELQRFIDSLN VVFHHIAEQL SFNTLVKDFN 300
  301 IIIRNHPTTE ALCNQVTQFL LHHFPVELIG LYLYQNGVLT RIAGVGQSES AQRDYSDPTT 360
  361 THCSVLRSGK PYAMKSLNGN FQVVSTSGVI ALNEVYYLPL QVNNQPIALL ELGTVGMLTM 420
  421 QQYHWLSQML DDLSVAIQLS QNAEQQRLAE RKVLEQSQLN QEILDATPNP MYCLSADGKF 480
  481 LTVNVKFLDL MGLYNNEVID KEPQEIFPAE VAERFAAAHQ VLTQQQSSQN YEVSLVDYTG 540
  541 VQREMLVYEA SFSDRADKVN GIVGILLDMT ERKEMEDELR KAKEAADAMS QAKGDFLANM 600
  601 SHEIRTPMNA ILGMAHLALN TPLDTTQRKY VSRINESAKN LLGIINDILD FSKMEAGKLN 660
  661 VERIDFNLDD VLDNVTAVVS LKAQEKGIEF LMDIDPHIPL GLIGDPLRLG QVMVNLCGNA 720
  721 VKFTSQGEIV LSARVSQLNE QQVTLRFAVK DTGIGIAQDK LDDLFDAFSQ ADNSITRQYG 780
  781 GTGLGLSISK QLVELMGGQI TVHSEEGKGS TFEFSVVCGL QDAKMRDISQ PVHGLADKRV 840
  841 LVVDDNDSAR HILDSLLTAM RFNVVTVSNG FEALSEIQQK PFDMLFVDWN MPGMNGIELL 900
  901 TRVKTLGLRG HMKSFLVTAY GREINLEGEN SKLVDALIVK PVNPSNLLDA IVTSYGIEHV 960
  961 RHKTNEAHHN SRPNFAGQSL LLVEDNEVNQ EVALGLLQDT GLNVVVANHG QEALERLEHA1020
 1021 DFDLVLMDMQ MPVMDGITAT EHIRANPRWQ SLPIVAMTAN AMAIDIERCL QAGMNEHLSK1080
 1081 PIEVDKFYQV LRHFLQVSDE QSFSSHSPNK PSASKPAMNA LLDLPQLTGV DLEQAIFRIG1140
 1141 GNQQRYFEIL RHFIDSQVDE LNSVTGLIEA QDWSSATRVA HTLKGSAANL GLEALAQLAA1200
 1201 EMEQSLEQQV LPSFELLQQA QSLLTQVDDE LSAWEHQHKE PLLAENLDWG LWYQQLQQVI1260
 1261 NDYDVTALSL SKSIRQVSQW DSAQQAALIS AIEDFDFEQA KALLASYPQL SGERLNQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle