YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116309308
Protein type:	Globular with Signal Peptide
Type Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKWQEAPA PGVRVLLFAV AAAALLLVVS ARKVGETCAA DRNCDAGLHC ETCVADGNVR  60
   61 PRCTRVTPVD PQTKARDLPF NRYAWLTTHN SFARLGTRSR TGTAIATAWN QQDTITDQLN 120
  121 NGVRGLMLDM YDFRNDIWLC HSFGGACQNF TAFVPAVEVL GEIERFLARN PSEVVTVFVE 180
  181 DYVESPMGLT RVLNASGLTK YVFPAWRMPK SGGDWPRLSD MVRDNHRLLL FTSKSAKEAA 240
  241 EDIPYEWHYV VENQYGTKGM IKGRCPNRAE SAAMNDLSRS LVLVNYFRDL PNFPVACKDN 300
  301 SAELLDMLTT CHDLSADRWA NFIAVDFYKR SDRGGAAEAT DRANGGLVCG CGSVSACSGN 360
  361 GTCTTARHGG TPKGIFNATS GATALLRPPT ATLQWQQLII LVPSTLAALL LSL

Type	Start	End	Confidence
Signal Peptide	1	31	0.99
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	413	0.99