YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSTR4_ORYSI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.98
Transmembrane Helix	41	61	0.95
Non-Cytoplasmic	62	74	0.83
Transmembrane Helix	75	95	0.89
Cytoplasmic	96	115	0.80
Transmembrane Helix	116	132	0.82
Non-Cytoplasmic	133	146	0.61
Transmembrane Helix	147	167	0.79
Cytoplasmic	168	173	0.87
Transmembrane Helix	174	195	0.87
Non-Cytoplasmic	196	203	0.82
Transmembrane Helix	204	227	0.85
Cytoplasmic	228	244	0.83
Transmembrane Helix	245	265	0.93
Non-Cytoplasmic	266	279	0.83
Transmembrane Helix	280	299	0.82
Cytoplasmic	300	308	0.67
Transmembrane Helix	309	343	0.73
Non-Cytoplasmic	344	405	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRNGVMECS VCHSKVVAPS PRSVSRAYDK HRSKISSKYR ALNFLLVSGD CILVGLQPIL  60
   61 VFMSKVDGKF QFSPISVNFL TEVTKVIFAI VMLIIQSRKQ KVGEKPLLSL STFVQAARNN 120
  121 ALLAVPALLY AINNYLKFIM QLYFSPATVK MLSNLKVLVI AILLKFIMRR KFSIIQWEAL 180
  181 ALLLIGISVN QLSSIPDGTK SFGLAVTTIA YIYTLIFVTV PSLASVYNEY ALKSQFDTSI 240
  241 YLQNLFLYGY GAIFNFLGIL GTVIFQGPES FDILQGHSRA TMFLICNNAA QGILSSFFFK 300
  301 YADTILKKYS STVATIFTGL ASAAFLGHTL TVNFLLGISI VFISMHQFFS PLAKVKDDKP 360
  361 AGALEPEDAQ NHRSSDSSFV NMTAGAADDA SHLTSTDERK PLLPI