YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116310948, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	75	0.99
Transmembrane Helix	76	96	0.93
Non-Cytoplasmic	97	103	0.74
Transmembrane Helix	104	125	0.91
Cytoplasmic	126	143	0.92
Transmembrane Helix	144	166	0.80
Non-Cytoplasmic	167	188	0.85
Transmembrane Helix	189	211	0.90
Cytoplasmic	212	251	0.86
Transmembrane Helix	252	271	0.93
Non-Cytoplasmic	272	305	0.90
Transmembrane Helix	306	330	0.86
Cytoplasmic	331	351	0.90
Transmembrane Helix	352	371	0.87
Non-Cytoplasmic	372	424	0.88
Transmembrane Helix	425	447	0.87
Cytoplasmic	448	454	0.77
Transmembrane Helix	455	475	0.93
Non-Cytoplasmic	476	496	0.81
Transmembrane Helix	497	519	0.87
Cytoplasmic	520	539	0.87
Transmembrane Helix	540	563	0.92
Non-Cytoplasmic	564	602	0.68
Transmembrane Helix	603	623	0.79
Cytoplasmic	624	636	0.45
Transmembrane Helix	637	660	0.86
Non-Cytoplasmic	661	669	0.51
Transmembrane Helix	670	689	0.55
Cytoplasmic	690	724	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVPTPSEA HGGATPTAAD VEMVEASELR RRGKPSGDRA TGPSRDGAAA AAEEAAAPSV  60
   61 ERVFADRPVP SWREQLTVRA FVVSFFLVIM FSVIVMKLNL TTGIIPSLNV SAGLLGFFFV 120
  121 RLWTAAIERV GLLRQPFTRQ ENTVIQTCVV AGYDIAFSGG FGNYILSMSE RIAGLGTEAN 180
  181 NAQNIKNPHL GWIIGFLFLV SFIGLFGLVP LRKVMIIDYK LTYPSGTATA FLINGFHTPH 240
  241 GAKIAAKQVK KLGIFFILSF FWGFFQWFYT ATDDCGFHKF PSLGLQAFQH KFFFDFSPTY 300
  301 VGVGMICPHI VNVSVLLGGI LSWGIMWPLI AKKRGDWFSA DLPDGSLHGM QGYRVFIAIA 360
  361 LILGDGLYNF LKMIILTAFS LRYQIKKKNA STLPVSDDGM VTTTAAVSYD EERRNELFVK 420
  421 DQIPWYVAYG GYAVVAAISI GTVPQIIPQL KWYQILVAYI VAPILAFCNA YGTGLTDWSL 480
  481 VTTYGKLAIF AFGAWTGASH GGVLAGLAAC GVMMNIVSTA ADLMQDFKTG YLTLASPRSM 540
  541 FVSQVIGTAM GCVIAPCVFW LFYKAFDNIG ISGSDYPAPN AAVFRSIAIL GVDGFSSLPK 600
  601 NCLNLCYAFF AAAIVVNLIR DLVPKVSRFI PIPMAMAIPF YIGSYFAIDM FIGTVILFVW 660
  661 QRVDRAKADT YGPAVASGMI CGDGIWVLPQ SVLALAKVKP PICMKFLSRR TNDKVDAFLT 720
  721 TLGK