YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sre-15
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNVLRFDRN EAVENGTIEI FSLIFKLEIT ANFIGILYYM LNVCIDYRTR GSMNNIRRIH  60
   61 QFVYVTCPIN HIVFIVEKIL IIWDFKEGFM CLPAYAIERS LATYFLHDYE KENRSYIGYT 120
  121 MSFLIYLISI ISVLVCTQFS TTFYPFLVLF MSNIISYIVN IINYKLNRYY YNCSLRKLHT 180
  181 YSLTERYQIS ENIQFAKFFH IFALTVAVFA TVCSLLLMLT SLSFTASEKN IFLLSFDTIY 240
  241 TIFILVCPYL HYKNNTTWQH EFKKCLKLYT SEVKCSSLAI GKPSLQLKTT FGERMNVGKN 300
  301 VQTDVYFSQL TNSWNTTKPN NIPT

Type	Start	End	Confidence
Cytoplasmic	1	115	0.58
Transmembrane Helix	116	137	0.85
Non-Cytoplasmic	138	141	0.40
Transmembrane Helix	142	164	0.66
Cytoplasmic	165	197	0.57
Transmembrane Helix	198	222	0.88
Non-Cytoplasmic	223	230	0.51
Transmembrane Helix	231	252	0.82
Cytoplasmic	253	324	0.56