YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55631188
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIGDWFRS IPAITRYWFA ATVAVPLVGK LGLISPAYLF LWPEAFLYRF QIWRPITATF  60
   61 YFPVGPGTGF LYLVNLYFLY QYSTRLETGA FDGRPADYLF MLLFNWICIV ITGLAMDMQL 120
  121 LMIPLIMSVL YVWAQLNRDM IVSFWFGTRF KACYLPWVIL GFNYIIGGSV INELIGNLVG 180
  181 HLYFFLMFRY PMDLGGRNFL STPQFLYRWL PSRRGGVSGF GVPPASMRRA ADQNGGGGRH 240
  241 NWGQGFRLGD Q

Type	Start	End	Confidence
Cytoplasmic	1	16	0.83
Transmembrane Helix	17	40	0.90
Non-Cytoplasmic	41	57	0.80
Transmembrane Helix	58	79	0.91
Cytoplasmic	80	97	0.77
Transmembrane Helix	98	132	0.76
Non-Cytoplasmic	133	152	0.46
Transmembrane Helix	153	187	0.68
Cytoplasmic	188	251	0.68