YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29568133, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.18
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLHVKWPFP AVPPLTWTLA SSVVMGLVGT YSCFWTKYMN HLTVHNREVL YELIEKRGPA  60
   61 TPLITVSNHQ SCMDDPHLWG ILKLRHIWNL KLMRWTPAAA DICFTKELHS HFFSLGKCVP 120
  121 VCRGDGVYQK GMDFILEKLN HGDWVHIFPE GKVNMSSEFL RFKWGIGRLI AECHLNPIIL 180
  181 PLWHVGMNDV LPNSPPYFPR FGQKITVLIG KPFSALPVLE RLRAENKSAV EMRKALTDFI 240
  241 QEEFQHLKTQ AEQLHNHLQP GR

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.55
Transmembrane Helix	15	35	0.59
Cytoplasmic	36	168	0.54
Transmembrane Helix	169	183	0.18
Non-Cytoplasmic	184	262	0.59