YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	T184B_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.26
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVRGAALAP DPASPTTTTA SPSVSATPEG SPTAMEHPVF LMTTAAQAIS GFFVWTALLI  60
   61 TCHQIYMHLR CYSRPNEQRH IVRILFIVPI YAFDSWLSLL FFTNDQYYVY FGTVRDCYEA 120
  121 FVIYNFLSLC YEYLGGESAI MSEIRGKAIE SSCMYGTCCL WGKTYSIGFL RFCKQATLQF 180
  181 CVVKPLMAVS TVILQAFGKY RDGDFDVTSG YLYVTIIYNI SVSLALYALF LFYFATRELL 240
  241 SPYSPVLKFF MVKSVIFLSF WQGMLLAILE KCGAIPKINS ARVSVGEGTV AAGYQDFIIC 300
  301 VEMFFAALAL RHAFTYKVYA DKRLDAQGRC APMKSISSSL KETMNPHDIV QDAIHNFSPA 360
  361 YQQYTQQSTL EPGPTWRGGT HSLSRSHSLS GARDNEKTLL LSSDDEF

Type	Start	End	Confidence
Non-Cytoplasmic	1	42	0.89
Transmembrane Helix	43	63	0.88
Cytoplasmic	64	80	0.86
Transmembrane Helix	81	102	0.90
Non-Cytoplasmic	103	150	0.69
Transmembrane Helix	151	165	0.26
Cytoplasmic	166	179	0.48
Transmembrane Helix	180	198	0.62
Non-Cytoplasmic	199	213	0.80
Transmembrane Helix	214	235	0.92
Cytoplasmic	236	248	0.79
Transmembrane Helix	249	269	0.85
Non-Cytoplasmic	270	292	0.81
Transmembrane Helix	293	314	0.70
Cytoplasmic	315	407	0.85