YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TNR19_MOUSE, TR1...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALKVLPLHR TVLFAAILFL LHLACKVSCE TGDCRQQEFK DRSGNCVLCK QCGPGMELSK  60
   61 ECGFGYGEDA QCVPCRPHRF KEDWGFQKCK PCADCALVNR FQRANCSHTS DAVCGDCLPG 120
  121 FYRKTKLVGF QDMECVPCGD PPPPYEPHCT SKVNLVKISS TVSSPRDTAL AAVICSALAT 180
  181 VLLALLILCV IYCKRQFMEK KPSWSLRSQD IQYNGSELSC FDQPRLRHCA HRACCQYHRD 240
  241 SAPMYGPVHL IPSLCCEEAR SSARAVLGCG LRSPTTLQER NPASVGNTMP AFFGSVSRSI 300
  301 CAEFSDAWPL MQNPLGGDSS LCDSYPELTG EDTNSLNPEN ESTASLDSSG GQDLAGTAAL 360
  361 ESSGNVSEST DSPRHGDTGT VWEQTLAQDA QRTPSQGGWE DRENLNLAMP TAFQDA

Type	Start	End	Confidence
Signal Peptide	1	29	0.98
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	168	0.99
Transmembrane Helix	169	192	0.94
Cytoplasmic	193	416	0.97