YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117616480
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDKTRLPYV ALDVICVLLA AMPMTILKLG KVYPFQRGFF CTDNSVKYPY HDSTIPSRIL  60
   61 AILGLGLPIF SMSIGESLSV YFNVLHSNSF VGNPYIATIY KAVGAFLFGV SASQSLTDIA 120
  121 KYTIGSLRPH FLAICNPDWS KINCSDGYIE DYICQGNEEK VKEGRLSFYS GHSSFSMYCM 180
  181 LFVALYLQAR MKGDWARLLR PMLQFGLIAF SIYVGLSRVS DYKHHWSDVT VGLIQGAAMA 240
  241 ILVALYVSDF FKDTHSYKER KEEDPHTTLH ETASSRNYST NHEP

Type	Start	End	Confidence
Cytoplasmic	1	8	0.74
Transmembrane Helix	9	30	0.87
Non-Cytoplasmic	31	58	0.74
Transmembrane Helix	59	82	0.84
Cytoplasmic	83	96	0.54
Transmembrane Helix	97	116	0.70
Non-Cytoplasmic	117	167	0.73
Transmembrane Helix	168	189	0.79
Cytoplasmic	190	197	0.75
Transmembrane Helix	198	217	0.89
Non-Cytoplasmic	218	228	0.68
Transmembrane Helix	229	251	0.86
Cytoplasmic	252	284	0.85