YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MOT2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.93
Transmembrane Helix	17	37	0.94
Non-Cytoplasmic	38	58	0.83
Transmembrane Helix	59	80	0.89
Cytoplasmic	81	87	0.73
Transmembrane Helix	88	107	0.90
Non-Cytoplasmic	108	113	0.74
Transmembrane Helix	114	136	0.87
Cytoplasmic	137	145	0.82
Transmembrane Helix	146	165	0.92
Non-Cytoplasmic	166	177	0.76
Transmembrane Helix	178	199	0.92
Cytoplasmic	200	245	0.96
Transmembrane Helix	246	267	0.93
Non-Cytoplasmic	268	280	0.80
Transmembrane Helix	281	300	0.89
Cytoplasmic	301	311	0.78
Transmembrane Helix	312	333	0.89
Non-Cytoplasmic	334	338	0.71
Transmembrane Helix	339	361	0.88
Cytoplasmic	362	369	0.77
Transmembrane Helix	370	392	0.86
Non-Cytoplasmic	393	404	0.87
Transmembrane Helix	405	428	0.89
Cytoplasmic	429	484	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSEPSAPLP QPLPPDGGWG WVVVCASFIS IGFSYAFPKA VTVFFKDIQE IFNTTSSQIA  60
   61 WISSIMLAVM YAGGPISSVL VNNYGSRPVV IVGGLLCCIG MILASYSNSV IELYLTVGFI 120
  121 GGLGLAFNLQ PALTIIGKYF YRRRPLANGC AMAGSPVFLS TLAPFNQYLF NNYGWKGSFL 180
  181 ILGGIFLHSC VAGCLMRPVG PSPNTKKSKS KVGSRHDSTL KKASKVSTAQ KVNRFLDFSL 240
  241 FMHRGFLIYL SGNVILFLGI FAPIIFLAQY AKHIGVDDYN SAFLLSVMAF IDMFARPSVG 300
  301 LIANTSLIRP RIQYLFSSAI IFTGICHLLC PLATTYSALV VYVVFFGLGF GSISSLLFEC 360
  361 LMDIVGATRF SSAVGLTTIV ECCPVLFGPP LAGKLLDITG EYKYLYIASG TVVLVSGTYL 420
  421 LIGNAINYRL LDKERKREKA KKKKSASHAS REMEALNRSK QDEVTVKASN AHNPPSDRDK 480
  481 ESNI