YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CY561_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHSSASVPA ALPYYVAFSQ LLGLTVVAVT GAWLGLYRGG IAWESSLQFN VHPLCMVIGM  60
   61 IFLQGDALLV YRVFRREAKR TTKILHGLLH VFAFIIALVG LVAVFDYHKK KGYADLYSLH 120
  121 SWCGILVFVL YFVQWLVGFS FFLFPGASFS LRSRYRPQHI FFGATIFLFS VGTALLGLKE 180
  181 ALLFKLGSKY STFEPEGVLA NVLGLLLVCF GVVVLYILAQ ADWKRPSQAE EQALSMDFKT 240
  241 LTEGDSPSPQ

Type	Start	End	Confidence
Cytoplasmic	1	11	0.95
Transmembrane Helix	12	36	0.86
Non-Cytoplasmic	37	50	0.85
Transmembrane Helix	51	74	0.86
Cytoplasmic	75	83	0.95
Transmembrane Helix	84	105	0.91
Non-Cytoplasmic	106	121	0.85
Transmembrane Helix	122	144	0.87
Cytoplasmic	145	158	0.80
Transmembrane Helix	159	178	0.95
Non-Cytoplasmic	179	197	0.89
Transmembrane Helix	198	219	0.94
Cytoplasmic	220	250	0.99