YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16151831
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYQSLRLEY LQIPPVSRAY TTACVLTTAA VQLELITPFQ LYFNPELIFK HFQIWRLITN  60
   61 FLFFGPVGFN FLFNMIFLYR YCRMLEEGSF RGRTADFVFM FLFGGFLMTL FGLFVSLVFL 120
  121 GQAFTIMLVY VWSRRNPYVR MNFFGLLNFQ APFLPWVLMG FSLLLGNSII VDLLGIAVGH 180
  181 IYFFLEDIFP NQPGGIRILK TPSILRTIFD TPDEDPNYNP LPEERPGAFA WGEGQRLGG

Type	Start	End	Confidence
Cytoplasmic	1	18	0.88
Transmembrane Helix	19	39	0.83
Non-Cytoplasmic	40	56	0.83
Transmembrane Helix	57	79	0.89
Cytoplasmic	80	96	0.84
Transmembrane Helix	97	123	0.87
Non-Cytoplasmic	124	152	0.72
Transmembrane Helix	153	184	0.73
Cytoplasmic	185	239	0.81