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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|123239886, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.92
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLGGLALC LLRLLLLGLQ RPPLPGAGAQ SAAGGCSFDE HYSNCGYSVA LGTNGFTWEQ  60
   61 INTWEKPMLD PAVPTGSFMM VNSSGRASGQ KAHLLLPTLK ENDTHCIDFH YYFSSRDRSS 120
  121 PGALNVYVKV NGGPQGNPVW NVSGVVTEGW VKAELAISTF WPHFYQVIFE SVSLKGHPGY 180
  181 IAVDEVRVLA HPCRKAPHFL RLQNVEVNVG QNATFQCIAG GKWSQHDKLW LQQWNGRDTA 240
  241 LMVTRVVNHR RFSATVSVAD TSQRSISKYR CVIRSDGGSG VSNYAELIVK EPPTPIAPPE 300
  301 LLAVGATYLW IKPNANSIIG DGPIILKEVE YRTTTGTWAE THIVDSPNYK LWHLDPDVEY 360
  361 EIRVLLTRPG EGGTGPPGPP LTTRTKCADP VHGPQNVEIV DIRARQLTLQ WEPFGYAVTR 420
  421 CHSYNLTVQY QYVFNQQQYE AEEVIQTSSH YTLRGLRPFM TIRLRLLLSN PEGRMESEEL 480
  481 VVQTEEDVPG AVPLESIQGG PFEEKIYIQW KPPNETNGVI TLYEINYKAV GSLDPSADLS 540
  541 SQRGKVFKLR NETHHLFVGL YPGTTYSFTI KASTAKGFGP PVTTRIATKI SAPSMPEYDA 600
  601 DTPLNETDTT ITVMLKPAQS RGAPVSVYQL VVKEERLQKS RRAADIIECF SVPVSYRNAS 660
  661 NLDSLHYFAA ELKPSNLPVT QPFTVGDNKT YNGYWNPPLS PLKSYSIYFQ ALSKANGETK 720
  721 INCVRLATKG ASTQNSNTVE PEKQVDNTVK MAGVIAGLLM FIIILLGVML TIKRRKLAKK 780
  781 QKETQSGAQR EMGPVASTDK PTAKLGTNRN DEGFSSSSQD VNGFTDGSRG ELSQPTLTIQ 840
  841 THPYRTCDPV EMSYPRDQFQ PAIRVADLLQ HITQMKRGQG YGFKEEYEAL PEGQTASWDT 900
  901 AKEDENRNKN RYGNIISYDH SRVRLLVLDG DPHSDYINAN YIDGYHRPRH YIATQGPMQE 960
  961 TVKDFWRMIW QENSASIVMV TNLVEVGRVK CVRYWPDDTE VYGDIKVTLI ETEPLAEYVI1020
 1021 RTFTVQKKGY HEIRELRLFH FTSWPDHGVP CYATGLLGFV RQVKFLNPPE AGPIVVHCSA1080
 1081 GAGRTGCFIA IDTMLDMAEN EGVVDIFNCV RELRAQRVNL VQTEEQYVFV HDAILEACLC1140
 1141 GNTAIPVCEF RSLYYNISRL DPQTNSSQIK DEFQTLNIVT PRVRPEDCSI GLLPRNHDKN1200
 1201 RSMDVLPLDR CLPFLISVDG ESSNYINAAL MDSHKQPAAF VVTQHPLPNT VADFWRLVFD1260
 1261 YNCSSVVMLN EMDTAQLCMQ YWPEKTSGCY GPIQVEFVSA DIDEDIIHRI FRICNMARPQ1320
 1321 DGYRIVQHLQ YIGWPAYRDT PPSKRSLLKV VRRLEKWQEQ YDGREGRTVV HCLNGGGRSG1380
 1381 TFCAICSVCE MIQQQNIIDV FHIVKTLRNN KSNMVETLEQ YKFVYEVALE YLSSF

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