YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CANT1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIQPFDQRE WNEPMHSLRI SVGGLPVLAS MTKATDPRFR PRWRVILTSF VGAALLWLLY  60
   61 SHHQGPVPGR PPTHNAHNWR LSQQRISHYN DTYPLSPPQR TPGGIRYRIA VIADLDTGSR 120
  121 AQEENTWFSY LKKGYLTLSD SGDRVSVEWD KDHGVLESHL AEKGRGMELS DLIVFNGKLY 180
  181 SVDDRTGVIY QIEGTKAVPW VILSDGDGTV EKGFKAEWLA VKDEHLYVGG LGKEWTTTTG 240
  241 EVMNENPEWV KVVGHRGSVD HENWVSSYNA LRAAAGIRPP GYLIHESACW SDTLQRWFFL 300
  301 PRRASHERYS EKDDERKGSN LLLSAAQDFR DISVRQVGTL IPTHGFSSFK FIPNTDDQII 360
  361 VALKSEEDNG RIATYVMAFT LDGRFLLPET KIGTVKYEGI EFI

Type	Start	End	Confidence
Cytoplasmic	1	42	0.70
Transmembrane Helix	43	61	0.93
Non-Cytoplasmic	62	403	0.99