YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|123858198, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.97
Transmembrane Helix	36	57	0.89
Non-Cytoplasmic	58	134	0.94
Transmembrane Helix	135	159	0.84
Cytoplasmic	160	174	0.80
Transmembrane Helix	175	199	0.83
Non-Cytoplasmic	200	205	0.73
Transmembrane Helix	206	227	0.93
Cytoplasmic	228	238	0.80
Transmembrane Helix	239	258	0.84
Non-Cytoplasmic	259	261	0.59
Transmembrane Helix	262	285	0.71
Cytoplasmic	286	502	0.74
Transmembrane Helix	503	526	0.88
Non-Cytoplasmic	527	538	0.82
Transmembrane Helix	539	561	0.86
Cytoplasmic	562	573	0.72
Transmembrane Helix	574	595	0.82
Non-Cytoplasmic	596	606	0.74
Transmembrane Helix	607	628	0.92
Cytoplasmic	629	635	0.82
Transmembrane Helix	636	655	0.94
Non-Cytoplasmic	656	666	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLHQSPTAR LLQKWCSHES PFGCRRHYNS RKKLKLIRVI GLVMGLVAVS TVPFSISAFT  60
   61 ETDSQSNRGE ASDMSGPRVA QGHRQRTLLD LNDKIRDYTP QPPASQEDQA ENSTEHTQGD 120
  121 YPKDIFSLEE RRKGAIILHV IGMIYMFIAL AIVCDEFFVP SLTVITEKLG ISDDVAGATF 180
  181 MAAGGSAPEL FTSLIGVFIA HSNVGIGTIV GSAVFNILFV IGMCALFSRE ILNLTWWPLF 240
  241 RDVSFYIVDL LMLITFFLDN VIMWWESLLL LTAYFAYVVF MKFNVQVERW VKQMISRNNV 300
  301 IKVTVPEAQA KSPTAGDKDG PTLPSKPRLQ RGGSSASLHN SLMRNSIFQL MIHTLDPLAE 360
  361 ELGSYGKLKY YDTMTEEGRF REKASILHKI AKKKCQVDEN ERQNGAANHV EKIELPNSTS 420
  421 TEVEMTPSSE ASEPVQNGNL SHNIEAADAP KATETAEEED DQPLSLSWPT NTRKQATFLI 480
  481 VFPIVFPLWI TLPDVRKPAS RKFFPITFFG SITWIAVFSY LMVWWAHQVG ETIGISEEIM 540
  541 GLTILAAGTS IPDLITSVIV ARKGLGDMAV SSSVGSNIFD ITVGLPLPWL LYTIIHRFSP 600
  601 VTVSSNGLFC AIVLLFIMLL FVILSIALCK WRMNKILGFI MFGLYFVFLV VSVLLEDKVL 660
  661 VCPVSI