YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26338704
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.87
Transmembrane Helix	72	90	0.67
Non-Cytoplasmic	91	139	0.78
Transmembrane Helix	140	159	0.77
Cytoplasmic	160	170	0.76
Transmembrane Helix	171	192	0.92
Non-Cytoplasmic	193	205	0.79
Transmembrane Helix	206	233	0.74
Cytoplasmic	234	246	0.71
Transmembrane Helix	247	271	0.82
Non-Cytoplasmic	272	290	0.86
Transmembrane Helix	291	312	0.92
Cytoplasmic	313	381	0.91
Transmembrane Helix	382	404	0.86
Non-Cytoplasmic	405	437	0.93
Transmembrane Helix	438	459	0.91
Cytoplasmic	460	526	0.92
Transmembrane Helix	527	547	0.88
Non-Cytoplasmic	548	550	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AIAASGAASS FAASGPRLLP APLPGPAPRF PRDEALGRGS LGNLEAGGSS VLVVRERMGL  60
   61 LDPSQKEVLR FAVNCRILTL VLQALFNLII PDHHADAFCP PRLAPSGSAD QLVEGLLGGL 120
  121 SRWDAEHFLF IAEHGYLYEH NFAFFPGFPL ALLMGTELLR PLQGLLSQRS CLLVSVALLN 180
  181 LLFSVLAAVA LHDLGCLVLH CPRQALCAAL LFCISPANVF LAAGYSEALF AFLTFSAMGQ 240
  241 LERGRGWASG LLFALAAGVR SNGLVSLGFL LHSQCRGFCS SLAVLSPWKP LVKLMASVCL 300
  301 SVLIVSLPFA LFQYRAYIQF CSPGSAPSIP EPLLQLAADK GYRLAGENAP PWCSWDLPLI 360
  361 YNYIQDVYWN VGLLRYYELK QVPNFLLATP VTVLVVWATW TYVTTHPWLC LTLGLQRTKD 420
  421 RENPEKPHRG FLSPKVFVYL VHAAALLVFG GLCMHVQVLT RFLASSTPIM YWFPAHLLQD 480
  481 QEPLLRCVDT EPGKLPQEKS PPGQKAPRNC LMKLFYDWKR CSPVTRCVLV YFLTYWLLGL 540
  541 ILHCNFLPWT