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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GPC6_MOUSE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.65
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSWIRAVIL PLSGLLLTLP AAADVKARSC SEVRQAYGAK GFSLADIPYQ EIAGEHLRIC  60
   61 PQEYTCCTTE MEDKLSQQSK LEFENLVEET SHFVRTTFVS RHKKFDEFFR ELLENAEKSL 120
  121 NDMFVRTYGM LYMQNSEVFQ DLFTELKRYY TGGNVNLEEM LNDFWARLLE RMFQLINPQY 180
  181 HFSEDYLECV SKYTDQLKPF GDVPRKLKIQ VTRAFIAART FVQGLTVGRE VANRVSKVSP 240
  241 TPGCIRALMK MLYCPYCRGL PTVRPCNNYC LNVMKGCLAN QADLDTEWNL FIDAMLLVAE 300
  301 RLEGPFNIES VMDPIDVKIS EAIMNMQENS MQVSAKVFQG CGQPKPAPAL RSARSAPENF 360
  361 NTRFRPYNPE ERPTTAAGTS LDRLVTDIKE KLKLSKKVWS ALPYTICKDE RVTAGTSNEE 420
  421 ECWNGHSKAR YLPEIMNDGL TNQINNPEVE VDITRPDTFI RQQIMALRVM TNKLKNAYNG 480
  481 NDVNFQDTSD ESSGSGSGSG CMDDVCPTEF EFVTTEAPAV DPDRREEESS ASKFSSSLIS 540
  541 WSLVCMVLAL QRLYR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle