YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HRH4_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESNSTGIL PPAAQVPLAF LMSSFAFAIM VGNAVVILAF VVDRNLRHRS NYFFLNLAIS  60
   61 DFLVGLISIP LYIPHVLFNW NFGSGICMFW LITDYLLCTA SVYNIVLISY DRYQSVSNAV 120
  121 SYRAQHTGIM KIVAQMVAVW ILAFLVNGPM ILASDSWKNS TNTKDCEPGF VTEWYILTIT 180
  181 MLLEFLLPVI SVAYFNVQIY WSLWKRRALS RCPSHAGFST TSSSASGHLH RAGVACRTSN 240
  241 PGLKESAASR HSESPRRKSS ILVSLRTHMN SSITAFKVGS FWRSESAALR QREYAELLRG 300
  301 RKLARSLAIL LSAFAICWAP YCLFTIVLST YPRTERPKSV WYSIAFWLQW FNSFVNPFLY 360
  361 PLCHRRFQKA FWKILCVTKQ PALSQNQSVS S

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.96
Transmembrane Helix	18	42	0.91
Cytoplasmic	43	51	0.94
Transmembrane Helix	52	73	0.94
Non-Cytoplasmic	74	85	0.81
Transmembrane Helix	86	107	0.90
Cytoplasmic	108	127	0.90
Transmembrane Helix	128	151	0.85
Non-Cytoplasmic	152	176	0.93
Transmembrane Helix	177	201	0.85
Cytoplasmic	202	306	0.98
Transmembrane Helix	307	328	0.94
Non-Cytoplasmic	329	342	0.83
Transmembrane Helix	343	363	0.87
Cytoplasmic	364	391	0.93