YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26331438
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLTMSNMTS SHICCNFLNM WKKSKISTMY YLNQDAKLSN LFLQASSPTT GTAPRSQSRL  60
   61 SVCPSTQDIC RICHCEGDEE SPLITPCRCT GTLRFVHQSC LHQWIKSSDT RCCELCKYDF 120
  121 IMETKLKPLR KWEKLQMTTS ERRKIFCSVT FHVIAVTCVV WSLYVLIDRT AEEIKQGNDN 180
  181 GVLEWPFWTK LVVVAIGFTG GLVFMYVQCK VYVQLWRRLK AYNRVIFVQN CPDTANKLEK 240
  241 NFPCNVNTEI KDAVVVPVPQ TGSNTLPTAE GAPPEVIPV

Type	Start	End	Confidence
Cytoplasmic	1	144	0.99
Transmembrane Helix	145	167	0.91
Non-Cytoplasmic	168	186	0.96
Transmembrane Helix	187	209	0.90
Cytoplasmic	210	279	0.97