YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|120300967
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFENIALGI FLFSQITVGM IGNSSILFYY VILKFTGKHL MPKDLIIEHL TVANCLFIIS  60
   61 KGIPQTLSDY GLKDFLDDFG CKLIMYIYRI TRGMSLYAMC LLSCFQAITI SPSNSRWMKF 120
  121 KHRATKYLGP SCSLSWLVHS FLNILTPARV SGPSYSKNTT NRMIYGYCSW FASGNFATAL 180
  181 YLFLLCFCDG LCLGLMAYSS VSMVSMLYRH KKQVKHIHRA QDFLKVSPEI RAMKTILILV 240
  241 CTFILSYSFS SMVAIVTAYS KYPELWGVSV FTFLEICFPI FCPFVLISNM KPISNLFLPC 300
  301 FHNNFLKE

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.62
Transmembrane Helix	8	33	0.86
Cytoplasmic	34	44	0.63
Transmembrane Helix	45	63	0.44
Non-Cytoplasmic	64	92	0.68
Transmembrane Helix	93	112	0.85
Cytoplasmic	113	126	0.68
Transmembrane Helix	127	146	0.78
Non-Cytoplasmic	147	178	0.78
Transmembrane Helix	179	202	0.88
Cytoplasmic	203	234	0.91
Transmembrane Helix	235	258	0.91
Non-Cytoplasmic	259	264	0.88
Transmembrane Helix	265	287	0.90
Cytoplasmic	288	308	0.94