YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|123704447, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.68
Transmembrane Helix	9	28	0.72
Cytoplasmic	29	37	0.75
Transmembrane Helix	38	61	0.88
Non-Cytoplasmic	62	117	0.97
Transmembrane Helix	118	138	0.93
Cytoplasmic	139	146	0.84
Transmembrane Helix	147	169	0.91
Non-Cytoplasmic	170	197	0.95
Transmembrane Helix	198	218	0.91
Cytoplasmic	219	228	0.85
Transmembrane Helix	229	251	0.91
Non-Cytoplasmic	252	279	0.92
Transmembrane Helix	280	302	0.84
Cytoplasmic	303	331	0.89
Transmembrane Helix	332	354	0.89
Non-Cytoplasmic	355	365	0.80
Transmembrane Helix	366	387	0.93
Cytoplasmic	388	407	0.95
Transmembrane Helix	408	432	0.90
Non-Cytoplasmic	433	447	0.96
Transmembrane Helix	448	471	0.90
Cytoplasmic	472	537	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFFTGMPLF LMELSLGQYG AAGPITVWKC CPLLKGIGIG MLCVSTLVCL YYNVIIAWTF  60
   61 YYLGSSFQSP LPWSCDALQN IALCANKTNS TQSPSEVFWN EKVLGVVHST GLSDPGPVRW 120
  121 PLALCLLAAW IIIFLCMLKG IHSSGKVVYL TATFPYFVLL VLIIRGATLE GSLDGVAFYL 180
  181 TPKWDQLADA QVWNDAASQI FYSLGIGVGG LLSMASYNKF DNNVIRDTII ITIGNCSTSF 240
  241 FAGFAIFSIL GHMAFKKGVP VDKVADSGPG LAFVAYPEAL ALLPGSVFWS ILFFLMLFML 300
  301 GVDTLFGNME GICTAVLDEF PQLRSNLKHK TLFLAVLCFS FYLMGLLLIT DGGIYWFTLI 360
  361 DSFSTSFGLI IITLFMCIGI SFFYGVNQFC QDIVDMICRC PPWCTKMLLY FKACWVVFTP 420
  421 FLLTFILTYI FIEMYRTSLR YGSYVYPIWG KALGVCMGAL CCLQILIWAI VAISKESGTL 480
  481 KDRFKKSIRP LNSWRVNNIN SSSQEQHVEP HTIEGPFTVN LTEADYTGMN WEGISEA