YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16716549, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSLENALYI QAGLGVLANM CLLVFYIFMV LGHRPKPMDL ISCQQTFIHI MLFFTAGDIL  60
   61 HTDIFESMNI ENDFKCKTTF YICRVMRGLS ICTTCLLSVF QAVTISPNTS LLAKFKHKLK 120
  121 KYTINAFFYI WSFNLSFSSN LIFYVGAYTN VSETNQMKVT KYCSLFPMNY IIRGLILTVT 180
  181 TSRDVFLVGV MLITSTYMVI ILFRHQRQCK HLHSIRHLRA SPEKRATQTI LLLVIFFVVM 240
  241 YWVDFIISST SVLLWMYDPV ILTVQKFVMN AYPTITPLVQ ISSDNRIINL LKNLQSKCH

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.78
Transmembrane Helix	8	30	0.93
Cytoplasmic	31	40	0.73
Transmembrane Helix	41	62	0.69
Non-Cytoplasmic	63	86	0.66
Transmembrane Helix	87	106	0.77
Cytoplasmic	107	125	0.71
Transmembrane Helix	126	147	0.91
Non-Cytoplasmic	148	184	0.85
Transmembrane Helix	185	205	0.94
Cytoplasmic	206	225	0.96
Transmembrane Helix	226	246	0.93
Non-Cytoplasmic	247	299	0.83