YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2143496, gi\|4...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPAMETAAE ENTEQSQERK GCFECCIKCL GGVPYASLVA TILCFSGVAL FCGCGHVALA  60
   61 GTVAILEQHF STNTSDHALL SEVIQLMQYV IYGIASFFFL YGIILLAEGF YTTSAVKELH 120
  121 GEFKTTACGR CISGMFVFLT YVLGVAWLGV FGFSAVPVFM FYNIWSTCEV IKSPQSNGTS 180
  181 GVEQICVDVR QYGIIPWNAF PGKICGSALE NICNTNEFYM SYHLFIVACA GAGATVIALI 240
  241 HFLMILSSNW AYLKDASKMQ AYQDIKAKEE QELQDIQSRS KEQLNSYT

Type	Start	End	Confidence
Cytoplasmic	1	37	0.95
Transmembrane Helix	38	60	0.89
Non-Cytoplasmic	61	88	0.87
Transmembrane Helix	89	111	0.89
Cytoplasmic	112	131	0.85
Transmembrane Helix	132	155	0.87
Non-Cytoplasmic	156	223	0.94
Transmembrane Helix	224	245	0.93
Cytoplasmic	246	288	0.94