YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PAQRA_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTLARLLDF QKTKYARFMN DRVPAHKRYQ PTEYEHAANC ATHAFWIIPS ILGSSNLYFL  60
   61 SDDDWETISA WIYGLGLCGL FVVSTIFHTV SWKKSHLRMV EHCLHMIDRM VIYFFIAASY 120
  121 APWLNLRELG PWASHMRWLV WIMASIGTIY VFFFHERYKL VELLCYVVMG FFPALVILSM 180
  181 PNTDGIWELM TGGAFYCLGM VFFKSDGRIP FAHAIWHLFV AFGAGTHYYA IWRYLYLPST 240
  241 LQTKVSK

Type	Start	End	Confidence
Cytoplasmic	1	39	0.90
Transmembrane Helix	40	60	0.84
Non-Cytoplasmic	61	68	0.88
Transmembrane Helix	69	90	0.94
Cytoplasmic	91	105	0.88
Transmembrane Helix	106	124	0.90
Non-Cytoplasmic	125	134	0.78
Transmembrane Helix	135	154	0.94
Cytoplasmic	155	162	0.78
Transmembrane Helix	163	180	0.94
Non-Cytoplasmic	181	185	0.75
Transmembrane Helix	186	203	0.76
Cytoplasmic	204	212	0.63
Transmembrane Helix	213	232	0.93
Non-Cytoplasmic	233	247	0.74