YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21717745, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLKYINKVN KISLFMTVVG TLGNMFVSVN YTFSYWGSSE KKPIYLILIH LAFTNILILL  60
   61 TKGLPKTILA FGLRNFLDDI GCKIIVYLER VARGLSICTS SFLTVVQAVI ISPRASGWNR 120
  121 LRPESAWHIL PFFSSFWILN ALISINLIHS IRSTSLNISQ QINYENSCYF TVENQEIKWI 180
  181 FLILMVLRDA LFQVAMGGAS GYMVFLLHKH HHHVLYLQNS KFLYRTPPEL RAAQSVLLLM 240
  241 LCFVFFYWTD CAFSLIINIS SKDNTLMINT REFLTLCYPT FSPFVLIHRD GLLSKFWHAH 300
  301 WEKLSKCL

Type	Start	End	Confidence
Cytoplasmic	1	11	0.92
Transmembrane Helix	12	34	0.89
Non-Cytoplasmic	35	43	0.85
Transmembrane Helix	44	64	0.91
Cytoplasmic	65	90	0.92
Transmembrane Helix	91	111	0.82
Non-Cytoplasmic	112	126	0.75
Transmembrane Helix	127	148	0.91
Cytoplasmic	149	188	0.81
Transmembrane Helix	189	208	0.85
Non-Cytoplasmic	209	231	0.79
Transmembrane Helix	232	257	0.79
Cytoplasmic	258	308	0.63