YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21717783, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLNLFIPGE KNMAPENLPV GILFFSQTAV GILGNWSILL HYVTSVITGK SLMPKDQILK  60
   61 HLTLANSLVI ISRVTPHIMV QLGLQYLLDD LLCKLTLYSN RVSRGISLHC TCLLSCFQAI 120
  121 TISLSHSRLM TLTHSVSKYM IQFCSISWLL HLLLNIKTAI DVIGPNTIKN VTRKIMLGYC 180
  181 SAFAFSNGVT GLHLFFVCFT DGLCLSIMVW ASIFMVKILY RHKSQLQYIH SAHHPLRVSP 240
  241 EDKATKTILI LVFTFVLSYS MSFILIIYTV VFDNPRLWII NIFTFLDTCF PTFCPFILIS 300
  301 NNQSTPKNAL PCCSRRNL

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.65
Transmembrane Helix	20	43	0.85
Cytoplasmic	44	61	0.62
Transmembrane Helix	62	80	0.49
Non-Cytoplasmic	81	104	0.47
Transmembrane Helix	105	126	0.82
Cytoplasmic	127	135	0.42
Transmembrane Helix	136	160	0.69
Non-Cytoplasmic	161	190	0.46
Transmembrane Helix	191	220	0.78
Cytoplasmic	221	246	0.97
Transmembrane Helix	247	270	0.92
Non-Cytoplasmic	271	277	0.82
Transmembrane Helix	278	299	0.91
Cytoplasmic	300	318	0.91