YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|223460262, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMTSSNLVV GILLFSQIVM GMLGNSSILF YYVILIFTGK HLTPKDLIIE HLTFANCLSI  60
   61 ISKGIPQTLS DLGFKNFLDD IGCKLIMYIY RIVRGMSLYA MCLLSCFQAI TISSGNSRLM 120
  121 ILKHRAVKYV GPSCLVSWLV HLLLNIMTPV KVIGPISSKN VTNVMSYGYC SWFTSSNVAT 180
  181 ALYMFLLCFC DGLCLSLMTC SSVSMVNILY KHKRQVKHIH SAQQLLKVLP EDKATQIILT 240
  241 LVCTFVISYS ISSIRVIFTT YSEGSVLWGV SVFIFLEICF PIFCPFVLIS NIKCSFKLFL 300
  301 PCCGKR

Type	Start	End	Confidence
Cytoplasmic	1	8	0.77
Transmembrane Helix	9	34	0.85
Non-Cytoplasmic	35	94	0.83
Transmembrane Helix	95	115	0.88
Cytoplasmic	116	125	0.81
Transmembrane Helix	126	148	0.80
Non-Cytoplasmic	149	180	0.85
Transmembrane Helix	181	205	0.87
Cytoplasmic	206	236	0.90
Transmembrane Helix	237	258	0.93
Non-Cytoplasmic	259	265	0.87
Transmembrane Helix	266	289	0.90
Cytoplasmic	290	306	0.92