YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18558734, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFENIVLGI FLFFQIAMGI IGNSLILVYY VSLKLTGKYL MPKDLIIEHL TFANCLFIIS  60
   61 KGIPQTLSNY GYKNFLDDFG CKLIIYAYRI TRGMSLYAMC LLCCFQAITI SPNYSRWMMF 120
  121 KHRATKYLGP SCSLCWLVQL FLNILAAARV SGPHYNKNTI NRMHLGYCSS FASGNFATAL 180
  181 YLFLLCFCDG LCLGLMAYSS VSMVSILYRH KKQVKHIHSA QHFLKVSPED RATQTILILV 240
  241 CTFVLSYLYS SILIIFTTYS KYPMLWVVSI FTFLEICFPI FCPFVLISSM KSRSSILLPC 300
  301 FGKR

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.69
Transmembrane Helix	8	33	0.86
Cytoplasmic	34	44	0.70
Transmembrane Helix	45	64	0.56
Non-Cytoplasmic	65	92	0.72
Transmembrane Helix	93	114	0.85
Cytoplasmic	115	126	0.72
Transmembrane Helix	127	148	0.86
Non-Cytoplasmic	149	178	0.76
Transmembrane Helix	179	202	0.87
Cytoplasmic	203	234	0.89
Transmembrane Helix	235	257	0.92
Non-Cytoplasmic	258	264	0.82
Transmembrane Helix	265	287	0.93
Cytoplasmic	288	304	0.95