YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|120407052, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSVPHLPLH DSQVQPSGND GMTARNMALG IIFLSQTALG LLGNSSVFFN YLLLCFSRYK  60
   61 LNSTDWMLNY LVVANFLTLL CKGVPQTMAA FGLKDFLSDF GCNLLFYIHK MGRGTCICSS 120
  121 SLMSVFQAIT ISNRNFMWKE FKAKSSKFSG FFLCLCCTLN ILMSTYNLFY MTGKLGHRNM 180
  181 TIIQDFGFCS VCLDKTGQIL HTIFLPLPDV VYLGLLVWTS ISTVLILHRH KQRLEHIPRN 240
  241 KHSSQSSTES RVIKTILLQL STFMLCYIIS CLFQLFLSFL HNPSWLLINI SIVISGCFPA 300
  301 MSPFLLMNHY SIASSHCVPC MRNWQNLI

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.80
Transmembrane Helix	31	54	0.85
Cytoplasmic	55	65	0.79
Transmembrane Helix	66	89	0.78
Non-Cytoplasmic	90	110	0.81
Transmembrane Helix	111	131	0.86
Cytoplasmic	132	147	0.90
Transmembrane Helix	148	170	0.90
Non-Cytoplasmic	171	209	0.94
Transmembrane Helix	210	229	0.93
Cytoplasmic	230	255	0.93
Transmembrane Helix	256	277	0.92
Non-Cytoplasmic	278	284	0.82
Transmembrane Helix	285	306	0.91
Cytoplasmic	307	328	0.91