YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21717683, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLKNILYF QAGLGILANT FLLCFYTFTI LGHRSKPMDP TSCQLTFAHI LFLLAGGDNW  60
   61 LAVILESLNI ENDFKCKAIF YTSRVMRGFS ICITCLLSVF QAVTISPHTS LLAKFKHKLN 120
  121 TYIFYAVLYI WFFNFLANSH MIFYVGGFNN VSETNQMRVT QSCSLFPMNY VISGLIFTVT 180
  181 TFRDVFLVGV MLITSAYIVI ILFRHQRHCR HLHSIRHLRV SPEKRATQTI LLLVVFFVVM 240
  241 YWVDFIISST SLLLWMYDPV ILTVQKLVVT AYPTITPLVQ ISSDKRVINV LKNSQSKCQQ 300
  301 IF

Type	Start	End	Confidence
Cytoplasmic	1	6	0.72
Transmembrane Helix	7	30	0.90
Non-Cytoplasmic	31	44	0.66
Transmembrane Helix	45	65	0.84
Cytoplasmic	66	84	0.67
Transmembrane Helix	85	105	0.90
Non-Cytoplasmic	106	121	0.65
Transmembrane Helix	122	148	0.79
Cytoplasmic	149	158	0.65
Transmembrane Helix	159	179	0.67
Non-Cytoplasmic	180	184	0.76
Transmembrane Helix	185	205	0.93
Cytoplasmic	206	225	0.95
Transmembrane Helix	226	246	0.93
Non-Cytoplasmic	247	302	0.76