YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148672778, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSLKNVLYF QAGFGVLANM FLVCFYIYII LGHRPKPTDL ISCQLTLVHI MMFLTGGDVW  60
   61 LTDLFESLNI ENDFKCKATF YISRVMRGLS ICTTCLLSVF QAVTISPNTT FLAKYKQKLK 120
  121 NYMIYAFLCM WSFNLSFSSN RIFFVGAYTN VSETKQMKAT KYCSLLPMNN IIRGVILTVT 180
  181 TSRDVFLVGA MLTTSTYMVI ILSRHQRQCK HLHSINHMRA SPEKRATQTI LMLVVFFVVM 240
  241 YWVDFIISTT SFLLWRYDPV ILTLQKFVMN AYPTITPLIQ VSFDNRIIIM LKNLQSKHYH 300
  301 LYF

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.79
Transmembrane Helix	8	30	0.93
Cytoplasmic	31	39	0.72
Transmembrane Helix	40	61	0.82
Non-Cytoplasmic	62	87	0.75
Transmembrane Helix	88	111	0.77
Cytoplasmic	112	121	0.77
Transmembrane Helix	122	144	0.84
Non-Cytoplasmic	145	184	0.85
Transmembrane Helix	185	205	0.90
Cytoplasmic	206	225	0.96
Transmembrane Helix	226	246	0.92
Non-Cytoplasmic	247	303	0.70