YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DOLK_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.88
Transmembrane Helix	12	35	0.86
Non-Cytoplasmic	36	72	0.70
Transmembrane Helix	73	93	0.86
Cytoplasmic	94	107	0.65
Transmembrane Helix	108	130	0.90
Non-Cytoplasmic	131	133	0.63
Transmembrane Helix	134	155	0.81
Cytoplasmic	156	164	0.55
Transmembrane Helix	165	184	0.86
Non-Cytoplasmic	185	220	0.64
Transmembrane Helix	221	243	0.95
Cytoplasmic	244	252	0.80
Transmembrane Helix	253	274	0.95
Non-Cytoplasmic	275	293	0.86
Transmembrane Helix	294	314	0.92
Cytoplasmic	315	333	0.81
Transmembrane Helix	334	350	0.86
Non-Cytoplasmic	351	354	0.85
Transmembrane Helix	355	375	0.94
Cytoplasmic	376	397	0.90
Transmembrane Helix	398	418	0.92
Non-Cytoplasmic	419	433	0.88
Transmembrane Helix	434	456	0.88
Cytoplasmic	457	470	0.82
Transmembrane Helix	471	489	0.92
Non-Cytoplasmic	490	498	0.66
Transmembrane Helix	499	519	0.65
Cytoplasmic	520	534	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRQCPPQES GAALSGSVLA EAAVVFAVVL SIHAAVWDRY SWCAVALAVQ AFYVQYKWDR  60
   61 LLQQGNAVFQ FRMSANSGLL PASMVMPLLG LVMKERCQTA GNPYFERFGI VVAATGMAVA 120
  121 LFSSVLALGI TRPVPTNTCA ISGLAGGVII YIMRHSLSVG EVIEVLEVLL IFVYLNMILL 180
  181 YLLPRCFTPG EALLVLGGIS FVLNQLIKRS LTESQGDPVD FFLLVVVVGM VLMGVFFSTL 240
  241 FVFMDSGTWA SSIFFHLMTC VLGLGVVLPW LHWLIRRNPL LWLLQFLFYT ETRIYLLAYW 300
  301 SLLASVACLV VLYQNAKRSS SESKKHRAPT ITRKYFHFIV VATYIPGIIF DRPLLYVAAT 360
  361 VCLAVFIFLE YVRYFRIKPL GHTLRSLLSL FLDERDSGPL ILTHIYLLLG MSLPIWLIPR 420
  421 PCTQKDSLEG ARALVPYAGV LAVGVGDTVA SIFGSTMGEI RWPGTKKTFE GTMTSIFAQI 480
  481 ISVALILIFD SGVDLNYSYA WILGSISTVS LLEAYTTQID NLLLPLYLLI LLMA