YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157823649, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMPLHQISA IPSQDAISAR VYRSKTKDKE QNEKTLGHSM SHPSNISKAG SSPPSTTAPV  60
   61 SAFSRTSVTP SNQDICRICH CEGDDESPLI TPCHCTGSLH FVHQACLQQW IKSSDTRCCE 120
  121 LCKYEFIMET KLKPLRKWEK LQMTASERRK IMCSVTFHVI AITCVVWSLY VLIDRTAEEI 180
  181 KQGQVTGILE WPFWTKLVVV AIGFTGGLLF MYVQCKVYLQ LWKRLKAYNR VIYVQNCPET 240
  241 SKKNIFEKSA LTEPTLENKE GHGMCHSTTN SSCTEPEDTG AEIINV

Type	Start	End	Confidence
Cytoplasmic	1	150	0.99
Transmembrane Helix	151	173	0.89
Non-Cytoplasmic	174	192	0.95
Transmembrane Helix	193	215	0.90
Cytoplasmic	216	286	0.97