YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLCN4_MOUSE, CLC...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.97
Transmembrane Helix	54	75	0.92
Non-Cytoplasmic	76	141	0.95
Transmembrane Helix	142	163	0.89
Cytoplasmic	164	184	0.84
Transmembrane Helix	185	206	0.83
Non-Cytoplasmic	207	213	0.72
Transmembrane Helix	214	232	0.88
Cytoplasmic	233	241	0.88
Transmembrane Helix	242	264	0.92
Non-Cytoplasmic	265	314	0.92
Transmembrane Helix	315	336	0.88
Cytoplasmic	337	351	0.86
Transmembrane Helix	352	372	0.87
Non-Cytoplasmic	373	426	0.91
Transmembrane Helix	427	447	0.84
Cytoplasmic	448	454	0.66
Transmembrane Helix	455	474	0.81
Non-Cytoplasmic	475	499	0.72
Transmembrane Helix	500	525	0.68
Cytoplasmic	526	747	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFLEEPFPD VGTYEDFHTI DWLREKSRDT DRHRKITSKS KESIWEFIKS LLDAWSGWVV  60
   61 MLLIGLLAGT LAGVIDLAVD WMTDLKEGVC LSAFWYSHEQ CCWTSNETTF EDRDKCPLWQ 120
  121 KWSELLLSQS EGASAYILNY LMYILWALLF AFLAVSLVRV FAPYACGSGI PEIKTILSGF 180
  181 IIRGYLGKWT LLIKTVTLVL VVSSGLSLGK EGPLVHVACC CGNFFSSLFS KYSKNEGKRR 240
  241 EVLSAAAAAG VSVAFGAPIG GVLFSLEEVS YYFPLKTLWR SFFRALVAAF TLRSINPFGN 300
  301 SRLVLFYVEY HTPWYMAELF PFILLGVFGG LWGTLFTRCN IAWCRRRKTT RLGRYPVLEV 360
  361 IAVTAVTAIV AYPNPYTRQS TSELISELFN DCGALESSQL CDYINDPNMT RPVDDIPDRP 420
  421 AGVGVYTAMW QLALALYFKI VITIFTFGMK IPSGLFIPSM AVGAMAGRMV GIGVEQLAYH 480
  481 HHDWIIFRNW CRPGADCVTP GLYAMVGAAA CLGGVTRMTV SLVVIMFELT GGLEYIVPLM 540
  541 AAAVTSKWVA DAFGKEGIYE AHIHLNGYPF LDVKDEFTHR TLATDVMRPR REEPPLSVLT 600
  601 QDSMTVEDVE TLIKETDYNG FPVLVSRDSE RLIGFAQRRE LILAIKNARQ RQEGIVSNSI 660
  661 MYFTEEPPEL PANSPHPLKL RRIFNLSPFT VTDHTPMETV VDIFRKLGLR QCLVTRSGRL 720
  721 LGIITKKDVL RHMAQMANQD PESIMFN