YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|255003706, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCDLEIGST VILAHTCPNL ENLLQYIVHK CDYYHNLKEK TLNDLMESRN MAIGVGLSLQ  60
   61 SILGILGNFS LLFYYLILYY KEHTLKIRDM ILVHVLTSNS LIIISKGFPQ IMGAFGWNQL 120
  121 FNDVGCKLIL YVQRLSRNMS IITTCLLSVF QAITISPRNS HWKKFKVKST KFMGLPISLF 180
  181 WILFMLVNML FPVYTSTKTN SKNKTQKRDS EFCHSLGRDK IVDILYTALC VFPEVVFSLL 240
  241 IVCSSTFMIA ILHVHKKRVQ HILCTHTYPR RSPENRATQT ILILVCTFLA FYTLSSVLQG 300
  301 YIALSHDPSW WVMNTTAIIS MGFPTLGPFV MSRDFTVSRF CFTCIRNIEK T

Type	Start	End	Confidence
Non-Cytoplasmic	1	55	0.88
Transmembrane Helix	56	78	0.89
Cytoplasmic	79	89	0.84
Transmembrane Helix	90	112	0.82
Non-Cytoplasmic	113	138	0.85
Transmembrane Helix	139	156	0.90
Cytoplasmic	157	171	0.83
Transmembrane Helix	172	191	0.92
Non-Cytoplasmic	192	234	0.88
Transmembrane Helix	235	254	0.92
Cytoplasmic	255	279	0.91
Transmembrane Helix	280	302	0.89
Non-Cytoplasmic	303	309	0.88
Transmembrane Helix	310	331	0.89
Cytoplasmic	332	351	0.92