YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28972730
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FFFLARQRHP SVLSEDHILY AILTFFLVLH YIFIDFVIIM VLGKVKSLTI SFDCLNDSNV  60
   61 PVYSSGDTVS GRVNLEVTGE IRVKSLKIHA RGHAKVRWTE SRNAGSNTAY TQNYTEEVEY 120
  121 FNHKDILIGH ERDDDNSEEG FHTIHSGRHE YAFSFELPQT PLATSFEGRH GSVRYWVKAE 180
  181 LHRPWLLPVK LKKEFTVFEH IDINTPSLLS PQAGTKEKTL CCWFCTSGPI SLSAKIERKG 240
  241 YTPGESIQIF AEIENCSSRM VVPKAAIYQT QAFYAKGKMK EVKQLVANLR GESLSSGKTE 300
  301 TWNGKLLKIP PVSPSILDCS IIRVEYSLMV YVDIPGAMDL LLSLPLVIGT IPLHPFGSRT 360
  361 SSVSSQCSMS MNWLALALPE RPEAPPSYAE VVTEEQRRNN LAPVGACDDF ERALQGPLFA 420
  421 YIQEFRFLPP PLYSEIDPNP DQSSEDRPSC PSR

Type	Start	End	Confidence
Cytoplasmic	1	17	0.76
Transmembrane Helix	18	42	0.88
Non-Cytoplasmic	43	453	0.81