YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TMX2_RAT
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVLAPLIAL VYSVPRLSRW LARPYCLLSA LLSIAFLLVR KLPPICNGLP TQREDGNPCD  60
   61 FDWREVEILM FLSAIVMMKN RRSITVEQHV GNIFMFSKVA NAILFFRLDI RMGLLYLTLC 120
  121 IVFLMTCKPP LYMGPEYIKY FNDKTIDEEL ERDKRVTWIV EFFANWSNDC QSFAPIYADL 180
  181 SLKYNCSGLN FGKVDVGRYT DVSTRYKVST SPLTKQLPTL ILFQGGKEVM RRPQIDKKGR 240
  241 AVSWTFSEEN VIREFNLNEL YQRAKKLSKG GDMSEEKPGN PTPTAVPDGE NKKDK

Type	Start	End	Confidence
Cytoplasmic	1	20	0.48
Transmembrane Helix	21	39	0.62
Non-Cytoplasmic	40	295	0.66