YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149020595, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELGNKTTTS YFILMRLTHD PTMEPFIFGF FLFTYLVTIL GNLLIIIAVS SDAHLQTPMY  60
   61 LFLSKLSFTD ICLSTTTVPN MLKNIHTQDQ SISYTGCVTQ ACFVLSFAVL ESCVLAAMAY 120
  121 DRYAAICHPL NYTVIMNPYF CGLLILLSLI ISIVNSLLQC LMILRLSFCT NIELPIFFCE 180
  181 LAQVIKLACS DTLINYILIY FATFVFGGIP ISGIIFSYTR IVSSILKISS LRGRYKAFST 240
  241 CGSHFLVVSL FYGAAVGVYI CSAITVSPRI TTVSYMMYTV LPQMLNPFIY SLRNRDMKKA 300
  301 LGKLITKVSC FL

Type	Start	End	Confidence
Cytoplasmic	1	25	0.77
Transmembrane Helix	26	49	0.91
Non-Cytoplasmic	50	60	0.67
Transmembrane Helix	61	82	0.46
Cytoplasmic	83	95	0.51
Transmembrane Helix	96	119	0.79
Non-Cytoplasmic	120	134	0.57
Transmembrane Helix	135	158	0.84
Cytoplasmic	159	166	0.43
Transmembrane Helix	167	185	0.55
Non-Cytoplasmic	186	196	0.78
Transmembrane Helix	197	219	0.92
Cytoplasmic	220	239	0.84
Transmembrane Helix	240	263	0.87
Non-Cytoplasmic	264	271	0.73
Transmembrane Helix	272	292	0.75
Cytoplasmic	293	312	0.83