YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CXB3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWKKLQDLL SGVNQYSTAF GRIWLSVVFV FRVLVYVVAA ERVWGDEQKD FDCNTRQPGC  60
   61 TNVCYDNFFP ISNIRLWALQ LIFVTCPSML VILHVAYREE RERKHRQKHG EHCAKLYSHP 120
  121 GKKHGGLWWT YLFSLIFKLI IELVFLYVLH TLWHGFTMPR LVQCASVVPC PNTVDCYIAR 180
  181 PTEKKVFTYF MVGASAVCII LTICEICYLI FHRIMRGLSK DKSTKSISSP KSSSRASTCR 240
  241 CHHKLLESGD LEAVPADDKL QASAPSLTPI

Type	Start	End	Confidence
Cytoplasmic	1	19	0.92
Transmembrane Helix	20	40	0.90
Non-Cytoplasmic	41	75	0.98
Transmembrane Helix	76	97	0.95
Cytoplasmic	98	126	0.98
Transmembrane Helix	127	149	0.92
Non-Cytoplasmic	150	188	0.94
Transmembrane Helix	189	212	0.90
Cytoplasmic	213	270	0.98