YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S13A2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.53
Transmembrane Helix	8	31	0.87
Non-Cytoplasmic	32	41	0.44
Transmembrane Helix	42	72	0.77
Cytoplasmic	73	84	0.42
Transmembrane Helix	85	104	0.88
Non-Cytoplasmic	105	111	0.43
Transmembrane Helix	112	138	0.81
Cytoplasmic	139	210	0.60
Transmembrane Helix	211	228	0.57
Non-Cytoplasmic	229	259	0.86
Transmembrane Helix	260	282	0.88
Cytoplasmic	283	320	0.94
Transmembrane Helix	321	340	0.91
Non-Cytoplasmic	341	365	0.88
Transmembrane Helix	366	386	0.89
Cytoplasmic	387	411	0.91
Transmembrane Helix	412	429	0.87
Non-Cytoplasmic	430	447	0.83
Transmembrane Helix	448	466	0.89
Cytoplasmic	467	474	0.61
Transmembrane Helix	475	496	0.79
Non-Cytoplasmic	497	501	0.63
Transmembrane Helix	502	525	0.79
Cytoplasmic	526	534	0.66
Transmembrane Helix	535	557	0.89
Non-Cytoplasmic	558	587	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATCWPALWA YRFYLIVLCL PIFLLPLPLI VQTKEAYCAY SIILMALLWC TEALPLAVTV  60
   61 LFPIVLFLLM GIMDASEGLE YFKDTNILFV GGLMVAIAVE HWNLHKRIAL QVLLIIGVRA 120
  121 ALLLLGFMLV TAFLSMWISN TATTAMMVPI GHAVLEQLQA SKKDVEGGNN NPTFELQEEC 180
  181 PQKEVTKLDN GQPVSAPSEP RTQKTQEHHR FSQGLSLCIC YSASIGGIDN LTGTTPNLVL 240
  241 QGQVNSLFPQ NANVVNFASW FGFAFPTMII LLLLAWLWLQ VLFLGVNFRK NFGFGEGEEE 300
  301 RKQAAFQVIK TQYRLLGPMS FAEKTCSTVL FVLLVVLWFT REPGFFPGWG DTVFANEKGQ 360
  361 SMPSDGTVAI FISLVMFIIP SKIPGLMEDP KKPGKLKAPP AILTWKTVND KMPWNIVILL 420
  421 GGGFALAKGS EQSGLSEWLG DKLTPLQHIP PSATAVILCL LIAIFTECTS NVATTTLFLP 480
  481 ILASMAQAIC LHPLYVMLPC TLAASLAFML PVATPPNAIV FSFGGLKVSD MARAGFLLNI 540
  541 IGVLATTLSI NSWSIPIFKL DTFPSWAHSN TSQCLLNPSN STVPGGL