YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SO1C1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	80	0.91
Transmembrane Helix	81	102	0.87
Non-Cytoplasmic	103	110	0.74
Transmembrane Helix	111	133	0.92
Cytoplasmic	134	227	0.91
Transmembrane Helix	228	250	0.83
Non-Cytoplasmic	251	276	0.86
Transmembrane Helix	277	298	0.95
Cytoplasmic	299	357	0.96
Transmembrane Helix	358	378	0.89
Non-Cytoplasmic	379	396	0.91
Transmembrane Helix	397	418	0.93
Cytoplasmic	419	430	0.86
Transmembrane Helix	431	451	0.88
Non-Cytoplasmic	452	557	0.94
Transmembrane Helix	558	581	0.89
Cytoplasmic	582	591	0.85
Transmembrane Helix	592	615	0.86
Non-Cytoplasmic	616	644	0.96
Transmembrane Helix	645	668	0.92
Cytoplasmic	669	716	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTSSKENAH LFHKNSAQPA GGPSFKAGYP STEEARPCCG KLKVFLGALS FVYFAKALTE  60
   61 GYLKSTITQI ERRFDIPSSL VGIIDGSFEI GNLLVITFVS YFGAKLHRPK IIGAGCLVMG 120
  121 FGTMLIAVPQ FFMEKYSYEK YERYSPSSNL TPNISPCYLE SSSPSPRSIV GKSQNKINDE 180
  181 CEVDTSSSMW VYVFLGNLLR GLGETPIQPL GIAYLDDFAS EDNAAFYIGC VQTVAIIGPI 240
  241 FGFLLGSLCA KLYVDIGFVN LDHITITPKD PQWVGAWWLG YLIAGFLSLL AAVPFWCLPK 300
  301 TLPRSQSRED SGSSSEKSKF ITDDPVNYQM APREESMKIM EMARDFLPSL KSLFRNPVYI 360
  361 LYLCASTVQF NSLFGMVTYK PKYIEQQYGQ SSSKANFVIG LINIPAVALG IFSGGIVMKK 420
  421 FRLGICEATK LYLGSSVFGY LLFLSLFALG CENSSVAGLT VSYQGTKPVS YHERALFSDC 480
  481 NSRCKCSDSK WEPMCGDNGI TYASACLAGC QSSSRSGKNI IFSNCTCVGF AAPKSGNWSG 540
  541 MMGRCQKDNG CSQMFLYFLV ISVITSYTLS LGGIPGYILL LRCIQPQLKS FALGIYTLAV 600
  601 RVLAGIPAPV YFGVLIDTSC LKWGFKKCGS RGSCRLYDSH AFRHIYLGLT TLLGTVSVFL 660
  661 STAVLLVLKK KYVSKRSSFI TAREKIVMSS SVKKETCAAR DHGLQPKYWP GKETRL