YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NAC1_RAT
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.79
Transmembrane Helix	12	30	0.68
Non-Cytoplasmic	31	74	0.78
Transmembrane Helix	75	93	0.90
Cytoplasmic	94	130	0.76
Transmembrane Helix	131	151	0.70
Non-Cytoplasmic	152	166	0.76
Transmembrane Helix	167	187	0.95
Cytoplasmic	188	197	0.88
Transmembrane Helix	198	218	0.93
Non-Cytoplasmic	219	231	0.75
Transmembrane Helix	232	249	0.93
Cytoplasmic	250	794	0.97
Transmembrane Helix	795	817	0.87
Non-Cytoplasmic	818	831	0.47
Transmembrane Helix	832	850	0.57
Cytoplasmic	851	872	0.75
Transmembrane Helix	873	893	0.89
Non-Cytoplasmic	894	902	0.83
Transmembrane Helix	903	925	0.91
Cytoplasmic	926	942	0.84
Transmembrane Helix	943	962	0.90
Non-Cytoplasmic	963	971	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRLSLPPNV SMGFRLVTLV ALLFTHVDHI TADTEAETGG NETTECTGSY YCKKGVILPI  60
   61 WEPQDPSFGD KIARATVYFV AMVYMFLGVS IIADRFMSSI EVITSQEKEI TIKKPNGETT 120
  121 KTTVRIWNET VSNLTLMALG SSAPEILLSV IEVCGHNFTA GDLGPSTIVG SAAFNMFIII 180
  181 ALCVYVVPDG ETRKIKHLRV FFVTAAWSIF AYTWLYIILS VSSPGVVEVW EGLLTFFFFP 240
  241 ICVVFAWVAD RRLLFYKYVY KRYRAGKQRG MIIEHEGDRP ASKTEIEMDG KVVNSHVDNF 300
  301 LDGALVLEVD ERDQDDEEAR REMARILKEL KQKHPDKEIE QLIELANYQV LSQQQKSRAF 360
  361 YRIQATRLMT GAGNILKRHA ADQARKAVSM HEVNMDVVEN DPVSKVFFEQ GTYQCLENCG 420
  421 TVALTIIRRG GDLTNTVFVD FRTEDGTANA GSDYEFTEGT VIFKPGETQK EIRVGIIDDD 480
  481 IFEEDENFLV HLSNVRVSSE VSEDGILDSN HVSAIACLGS PNTATITIFD DDHAGIFTFE 540
  541 EPVTHVSESI GIMEVKVLRT SGARGNVIIP YKTIEGTARG GGEDFEDTCG ELEFQNDEIV 600
  601 KTISVKVIDD EEYEKNKTFF IEIGEPRLVE MSEKKALLLN ELGGFTLTEG KKMYGQPVFR 660
  661 KVHARDHPIP STVISISEEY DDKQPLTSKE EEERRIAEMG RPILGEHTKL EVIIEESYEF 720
  721 KSTVDKLIKK TNLALVVGTN SWREQFIEAI TVSAGEDDDD DECGEEKLPS CFDYVMHFLT 780
  781 VFWKVLFAFV PPTEYWNGWA CFIVSILMIG LLTAFIGDLA SHFGCTIGLK DSVTAVVFVA 840
  841 LGTSVPDTFA SKVAATQDQY ADASIGNVTG SNAVNVFLGI GVAWSIAAIY HAANGEQFKV 900
  901 SPGTLAFSVT LFTIFAFINV GVLLYRRRPE IGGELGGPRT AKLLTSSLFV LLWLLYIFFS 960
  961 SLEAYCHIKG F