YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149056183, gi...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAREECKALL DALNKTTACY HHLVLTVGGS ADTQDLREEL QKTRQKAREL AMATGSRLTV  60
   61 ALRDRSLATE ERAEFERLWV AFSGCLDLLE ADMQRALALG AAFPLHAPRR PLVRTGVAGG 120
  121 SSAVAARALS ARSLRHEAES DFDVADLPQL EREVLQVGEM IDNMEMKVNV PRWTVQARQS 180
  181 AGAELLSGAS AGASSAGGIS VEERAGPCDP SRALAATVFS AVLLVAVALA LCVAKLS

Type	Start	End	Confidence
Cytoplasmic	1	180	0.59
Transmembrane Helix	181	199	0.36
Non-Cytoplasmic	200	212	0.60
Transmembrane Helix	213	234	0.91
Cytoplasmic	235	237	0.53