YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71682182, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKPRLFRLW LALGSALMIL LIIVYWDNVG TAHFYLHTSL SRPHILEPLP TQGLAEENVL  60
   61 ASDVDEFLDT LLSSDAKHND LSRRKTEQPP VLTPSKPVLS HMEENVRGYD WSTHDAQQNP 120
  121 DRDRQQAERR SLLRDFCANA SLAFPTKDRS FDDIPNYELN HLIVDDRHGV IYCYVPKVAC 180
  181 TNWKRVMIVL SESLLDRGSP YRDPLDIPRE HVHNTSTHLT FNKFWRRYGK FSRHLMKVKL 240
  241 KKYTKFLFVR DPFVRLISAF RSKFELENEE FYRKFAVPML RLYANHTSLP ASVSEAFSAG 300
  301 LKVSFANFIQ YLLDPHTEKL APFNEHWRQV YRLCHPCQID YDFVGKLETL DEDAAQLLRS 360
  361 LKVDSQLHFP PSYRNRTASS WEEDWFANIP LAWRQQLYKL YEADFVLFGY PKPENLLRD

Type	Start	End	Confidence
Cytoplasmic	1	8	0.50
Transmembrane Helix	9	27	0.54
Non-Cytoplasmic	28	419	0.99