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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NICA_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.87
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATARGGSGP DPGSRGLLLL SFSVVLAGLC GGNSVERKIY IPLNKTAPCV RLLNATHQIG  60
   61 CQSSISGDTG VIHVVEKEDD LKWVLTDGPN PPYMVLLEGK LFTRDIMEKL KGETSRIAGL 120
  121 AVTLAKPNST SSFSPSVQCP NDGFGIYSNS YGPEFAHCKK TLWNELGNGL AYDDFSFPIF 180
  181 LLEDENETKV IKQCYQDHNL GQNGSAPSFP LCAMQLFSHM HAVISTATCM RRSFIQSTFS 240
  241 INPEIVCDPL SDYNVWSMLK PINTSGGLEP DVRVVVAATR LDSRSFFWNV APGAESAVAS 300
  301 FVTQLAAAEA LHKAPDVTTL PRNVMFVFFQ GETFDYIGSS RMVYDMENGK FPVRLENIDS 360
  361 FVELGQVALR TSLELWMHTD PMSQKNESVK NQVEDLLVTL EQSGADTPQV VLSRLVQSQA 420
  421 LPPSSLQRFL RARNISGVVL ADHSGSFHNR YYQSIYDTAE NINVTYPESQ SPEEDLNFVT 480
  481 DTAKALADVA TVLARALYKL AGGTNFNNSI QADPQTVTRL LYGFLVRANN SWFQSILRHD 540
  541 LRSYLDDGPL QHYIAVSSPT NTTYVVQYAL ANLTGKVTNL TQEQCQDPSK VPNESKDLYE 600
  601 YSWVQGPWNS NKTERLPRCV RSTVRLARAL SPAFELSQWS STEYSTWAES RWKDIQARIF 660
  661 LIASKELEFI TLIVGFSILV FSLIVTYCIN AKADVLFVAP REPGAVSY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle